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Gaalxy

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.
  • Accessible: Users without programming experience can easily specify parameters and run tools and workflows.

  • Reproducible: Galaxy captures information so that any user can repeat and understand a complete computational analysis.

  • Transparent: Users share and publish analyses via the web and create Pages, interactive, web-based documents that describe a complete analysis.

This is the Galaxy Community Wiki. It, along with the public Galaxy server, describe all things Galaxy. You are encouraged to create a login and start editing.

Use Galaxy

Galaxy's public service web site makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist. Extensive user documentation (applicable to any public or local Galaxy instance) is available on this wiki and elsewhere.

usegalaxy.org

Deploy Galaxy

Galaxy is open source for all organizations. Local Galaxy servers can be set up by downloading and customizing the Galaxy application.

usegalaxy.org

Community & Project

Galaxy has a large and active user community and many ways to Get Involved.

Contribute

  • Users: Share your histories, workflows, visualizations, data libraries, and Galaxy Pages, enabling others to use and learn from them.

  • Deployers and Developers: Contribute tool definitions to the Galaxy Tool Shed (making it easy for others to use those tools on their installations), and code to the core release.

  • Everyone: Get Involved!

Galaxy News Headlines

News (headlines only) of interest to the Galaxy Community
[WWW] http://wiki.g2.bx.psu.edu/News

Opening @ GigaScience / BGI HK

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GCC2012 Abstract Submission is Open

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Internship @ Vilmorin & Co

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February 2012 Galaxy Update

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January 27, 2012 Distribution & News Brief

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January 20, 2012 Distribution & News Brief

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Galaxy @ PAG 2012

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Custom Galaxy Search

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New Galaxy Group @ CiteULike

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January 2012 Galaxy Events

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New Galaxy-Announce Mailing List

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An Update to Galaxy Cloudman

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  • Galaxy-related software developer opening @GigaScience / BGI HK. http://t.co/PlCYEduR #usegalaxy Mon Feb 20 17:33:25 +0000 2012
  • Galaxy Toolshed: java_genomics_toolkit: NGS, esp Wig transformations (add/log/Z-score/etc) & viz (KMeans/heatmaps) http://t.co/F5Z5u4S7 Mon Feb 20 17:22:40 +0000 2012
  • New http://t.co/bAniSaBU users who check "Subscribe to a mailing list" are now added to galaxy-announce list, not high-volume galaxy-user. Sat Feb 18 08:48:00 +0000 2012
  • MACS 1.4 (ChIP-Seq peak calling) now available in Galaxy Tool Shed (Main has 1.0.1) http://t.co/F5Z5u4S7 #usegalaxy Fri Feb 17 18:53:37 +0000 2012
  • MT @agapow: did a quick dump of my Galaxy installation notes at BioCoders http://t.co/OLmFGWWt #usegaalxy Fri Feb 17 17:06:50 +0000 2012
  • MT @GigaScience recruiting senior database developer in Hong Kong; Integration with Galaxy and the BGI cloud http://t.co/SahFZ7OR #usegalaxy Thu Feb 16 18:27:23 +0000 2012