Screencasts are one of several ways to learn how to use Galaxy. These video tutorials cover many aspects of Galaxy, from simple tasks like uploading data, to complex analysis.

We are currently in the process of revamping Galaxy's screencast library. The current screencasts use a variety of technologies, including QuickTime (you may need to download the QuickTime player).

We hope to have both the screencast content and the screencast technology brought up to date by the end of 2011.

Getting Started

• Galaxy 101

Tool tutorials

• Using UCSC from Galaxy
• Sequences as Tab Delimited Data
• Filtering Data
• Grouping
• Intervals
• Joining Features
• MAF_alignExtractStitch/Stitching Multiple Alignments
• Filtering Multiple Alignments and Converting Formats
• Manipulation of Multiple Alignments
• Sharing your work
• Create workflow from history
• Create workflow from Scratch
• Import Workflow
• Edit Workflow
• Convert Workflow in a Tool
• Extracting Sequences and Alignments
• Basic FASTQ Manipulation
• Advanced FASTQ Manipulation
• Copy History Items
• Using FTP
• Mapping Against a Custom Reference Genome
• Custom Genome Prep
• Managing Histories
• BioMart

Interval Operations tutorial

Also see Learn/Interval Operations.

• Preparing Data
• Intersect and Subtract
• Merge and Concatenate
• Base Coverage and Compliment
• Feature Coverage
• Finding Clusters
• Joining Features

Examples of other analyses

• TAF1: Which genes' promoter regions contain these sites?
• Metagenomics 1 and Metagenomics 2
• Bushman Data Access and Bushman Data Analysis
• SOLiD Single End
• SOLiD Mate Pair
• Mapping Against Custom Genome
• Illumina Single Ends
• Illumina Paired Ends
• 454 Mapping Single End
• DNase I hypersensitive sites

Sample Tracking

• Sample Tracking Admin
• Sample Tracking Create Forms
• Sample Tracking Request Admin
• Sample Tracking Request
• Sample Tracking Sequencer Config
• Sample Tracking Transfer Datasets
• PacBio Demo

Developers How To

• Tool integration
• Galaxy in the Cloud

Archives

• Galaxy2ENCODE - A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (Genome Research 2007)
• Current Protocols in BioInformatics - Galaxy: Interactive Analyses of Genomic Data by Example
• Screencasts detailing analysis of data generated by Affymetrix tiling arrays